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1

An integrated bioinformatics approach to improve two-color microarray quality-control: impact on biological conclusions

Rachel I. M. van Haaften, Cristina Luceri, Arie van Erk, Chris T. A. Evelo

Journal:

Genes & Nutrition

Year:

2009

Language:

english

File:

PDF, 237 KB

english, 2009

2

The public road to high-quality curated biological pathways

Michiel E. Adriaens, Magali Jaillard, Andra Waagmeester, Susan L.M. Coort, Alex R. Pico, Chris T.A. Evelo

Journal:

Drug Discovery Today

Year:

2008

Language:

english

File:

PDF, 585 KB

english, 2008

3

Rett syndrome – biological pathways leading from MECP2 to disorder phenotypes

Ehrhart, Friederike, Coort, Susan L. M., Cirillo, Elisa, Smeets, Eric, Evelo, Chris T., Curfs, Leopold M. G.

Journal:

Orphanet Journal of Rare Diseases

Year:

2016

Language:

english

File:

PDF, 1.26 MB

english, 2016

4

Advancing food, nutrition, and health research in Europe by connecting and building research infrastructures in a DISH-RI: Results of the EuroDISH project

Snoek, Harriëtte M., Eijssen, Lars M.T., Geurts, Marjolein, Vors, Cecile, Brown, Kerry A., Bogaardt, Marc-Jeroen, Dhonukshe-Rutten, Rosalie A.M., Evelo, Chris T., Fezeu, Leopold, Finglas, Paul M., Lav

Journal:

Trends in Food Science & Technology

Year:

2018

Language:

english

File:

PDF, 1.27 MB

english, 2018

5

Comprehensive bioinformatics analysis of trabecular meshwork gene expression data to unravel the molecular pathogenesis of primary open‐angle glaucoma

Liesenborghs, Ilona, Eijssen, Lars M. T., Kutmon, Martina, Gorgels, Theo G. M. F., Evelo, Chris T., Beckers, Henny J. M., Webers, Carroll A. B., Schouten, Johannes S. A. G.

Journal:

Acta Ophthalmologica (Blackwell)

Year:

2019

Language:

english

File:

PDF, 815 KB

english, 2019

6

Stratifying cellular metabolism during weight loss: an interplay of metabolism, metabolic flexibility and inflammation

Tareen, Samar H. K., Kutmon, Martina, de Kok, Theo M., Mariman, Edwin C. M., van Baak, Marleen A., Evelo, Chris T., Adriaens, Michiel E., Arts, Ilja C. W.

Journal:

Scientific Reports

Year:

2020

Language:

english

File:

PDF, 1.10 MB

english, 2020

7

FAIR Principles: Interpretations and Implementation Considerations

Jacobsen, Annika, de Miranda Azevedo, Ricardo, Juty, Nick, Batista, Dominique, Coles, Simon, Cornet, Ronald, Courtot, MÃ©lanie, Crosas, MercÃ¨, Dumontier, Michel, Evelo, Chris T., Goble, Carole, Guizz

Journal:

Data Intelligence

Year:

2020

File:

PDF, 343 KB

2020

8

Erythrocyte antioxidant defense response against cigarette smoking in humans—the glutathione S-transferase vulnerability

Hilmi Orhan, Chris T. A. Evelo, Gönül Şahin

Journal:

Journal of Biochemical and Molecular Toxicology

Year:

2005

Language:

english

File:

PDF, 97 KB

english, 2005

9

Four selenoproteins, protein biosynthesis, and Wnt signalling are particularly sensitive to limited selenium intake in mouse colon

Anna Kipp, Antje Banning, Evert M. van Schothorst, Catherine Méplan, Lutz Schomburg, Chris Evelo, Susan Coort, Stan Gaj, Jaap Keijer, John Hesketh, Regina Brigelius-Flohé

Journal:

Molecular Nutrition & Food Research

Year:

2009

Language:

english

File:

PDF, 244 KB

english, 2009

10

Glutathione depletion in human erythrocytes as an indicator for microsomal activation of cyclophosphamide and 3-hydroxyacetanilide

Nicole G.M. Palmen, Chris T.A. Evelo

Journal:

Year:

1993

Language:

english

File:

PDF, 689 KB

english, 1993

11

Exploring pathway interactions in insulin resistant mouse liver

Thomas Kelder, Lars Eijssen, Robert Kleemann, Marjan van Erk, Teake Kooistra, Chris Evelo

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 890 KB

english, 2011

12

2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting

Freek G Bouwman, Baukje de Roos, Isabel Rubio-Aliaga, L Katie Crosley, Susan J Duthie, Claus Mayer, Graham Horgan, Abigael C Polley, Carolin Heim, Susan LM Coort, Chris T Evelo, Francis Mulholland, Ia

Journal:

BMC Medical Genomics

Year:

2011

Language:

english

File:

PDF, 1.90 MB

english, 2011

13

Differential valine metabolism in adipose tissue of low and high fat-oxidizing obese subjects

Mandy Claessens, Wim H. M. Saris, Freek G. Bouwman, Chris T. A. Evelo, Gabby B. J. Hul, Ellen E. Blaak, Edwin C. M. Mariman

Journal:

PROTEOMICS - Clinical Applications

Year:

2007

Language:

english

File:

PDF, 363 KB

english, 2007

14

Genetic deficiency of human class mu glutathione S-transferase isoenzymes in relation to the urinary excretion of the mercapturic acids of Z- and E-1,3-dichloropropene

Ria M. E. Vos, Ronald T. H. van Welie, Wilbert H. M. Peters, Chris T. A. Evelo, Jan J. P. Boogaards, Nico P. E. Vermeulen, Peter J. van Bladeren

Journal:

Archives of Toxicology

Year:

1991

Language:

english

File:

PDF, 562 KB

english, 1991

15

In vitro haematotoxic effects of three methylated hydroxylamines

Anita A. M. G. Spooren, Chris T. A. Evelo

Journal:

Archives of Toxicology

Year:

1997

Language:

english

File:

PDF, 180 KB

english, 1997

16

Oxidative effects in human erythrocytes caused by some oximes and hydroxylamine

Nicole G. M. Palmen, Chris T. A. Evelo

Journal:

Archives of Toxicology

Year:

1998

Language:

english

File:

PDF, 586 KB

english, 1998

17

Bioinformatics for the NuGO proof of principle study: analysis of gene expression in muscle of ApoE3*Leiden mice on a high-fat diet using PathVisio

Susan L. M. Coort, Martijn P. van Iersel, Marjan van Erk, Teake Kooistra, Robert Kleemann, Chris T. A. Evelo

Journal:

Genes & Nutrition

Year:

2008

Language:

english

File:

PDF, 363 KB

english, 2008

18

The Micronutrient Genomics Project: a community-driven knowledge base for micronutrient research

Ben van Ommen, Ahmed El-Sohemy, John Hesketh, Jim Kaput, Michael Fenech, Chris T. Evelo, Harry J. McArdle, Jildau Bouwman, Georg Lietz, John C. Mathers, Sue Fairweather-Tait, Henk van Kranen, Ruan Ell

Journal:

Genes & Nutrition

Year:

2010

Language:

english

File:

PDF, 506 KB

english, 2010

19

Answering biological questions: querying a systems biology database for nutrigenomics

Chris T. Evelo, Kees van Bochove, Jahn-Takeshi Saito

Journal:

Genes & Nutrition

Year:

2011

Language:

english

File:

PDF, 329 KB

english, 2011

20

Connecting the Human Variome Project to nutrigenomics

Jim Kaput, Chris T. Evelo, Giuditta Perozzi, Ben van Ommen, Richard Cotton

Journal:

Genes & Nutrition

Year:

2010

Language:

english

File:

PDF, 331 KB

english, 2010

21

Nature Europe site should highlight most productive countries

Evelo, Chris T., Waagmeester, Andra

Journal:

Year:

2010

Language:

english

File:

PDF, 97 KB

english, 2010

22

Tocotrienols Inhibit Human Glutathione S-Transferase P1-1

Rachel I. M. van Haaften, Guido R. M. M. Haenen, Chris T. A. Evelo, Aalt Bast

Journal:

Year:

2002

Language:

english

File:

PDF, 108 KB

english, 2002

23

Effect of Vitamin E on Glutathione-Dependent Enzymes

van Haaften, Rachel I. M., Haenen, Guido R. M. M., Evelo, Chris T. A., Bast, Aalt

Journal:

Drug Metabolism Reviews

Year:

2003

Language:

english

File:

PDF, 610 KB

english, 2003

24

Effect of supplementation with an 80:20 cis9,trans11 conjugated linoleic acid blend on the human platelet proteome

Eva-Maria Bachmair, Michiel L. Bots, Louise I. Mennen, Thomas Kelder, Chris T. Evelo, Graham W. Horgan, Isobel Ford, Baukje de Roos

Journal:

Molecular Nutrition & Food Research

Year:

2012

Language:

english

File:

PDF, 747 KB

english, 2012

25

Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes

Danyel G.J. Jennen, Stan Gaj, Pieter J. Giesbertz, Joost H.M. van Delft, Chris T. Evelo, Jos C.S. Kleinjans

Journal:

Drug Discovery Today

Year:

2010

Language:

english

File:

PDF, 1.16 MB

english, 2010

26

No reduction of α-tocopherol quinone by glutathione in rat liver microsomes

Rachel I.M van Haaften, Chris T.A Evelo, Guido R.M.M Haenen, Aalt Bast

Journal:

Biochemical Pharmacology

Year:

2001

Language:

english

File:

PDF, 136 KB

english, 2001

27

Hypochlorous acid is a potent inhibitor of GST P1-1

Rachel I.M van Haaften, Gertjan J.M den Hartog, Chris T.A Evelo, Guido R.M.M Haenen, Aalt Bast

Journal:

Chemico-Biological Interactions

Year:

2001

Language:

english

File:

PDF, 84 KB

english, 2001

28

Inhibition of human glutathione S-transferase P1-1 by tocopherols and α-tocopherol derivatives

Rachel I.M. Van Haaften, Chris T.A. Evelo, John Penders, Miguel P.F. Eijnwachter, Guido R.M.M. Haenen, Aalt Bast

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

2001

Language:

english

File:

PDF, 265 KB

english, 2001

29

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

Martijn P van Iersel, Alexander R Pico, Thomas Kelder, Jianjiong Gao, Isaac Ho, Kristina Hanspers, Bruce R Conklin, Chris T Evelo

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 299 KB

english, 2010

30

Biologically relevant effects of mRNA amplification on gene expression profiles

Rachel IM van Haaften, Blanche Schroen, Ben JA Janssen, Arie van Erk, Jacques JM Debets, Hubert JM Smeets, Jos FM Smits, Arthur van den Wijngaard, Yigal M Pinto, Chris TA Evelo

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.37 MB

english, 2006

31

Linking microarray reporters with protein functions

Stan Gaj, Arie van Erk, Rachel IM van Haaften, Chris TA Evelo

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 763 KB

english, 2007

32

Presenting and exploring biological pathways with PathVisio

Martijn P van Iersel, Thomas Kelder, Alexander R Pico, Kristina Hanspers, Susan Coort, Bruce R Conklin, Chris Evelo

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.68 MB

english, 2008

33

Fasting induces a biphasic adaptive metabolic response in murine small intestine

Milka Sokolović, Diederik Wehkamp, Aleksandar Sokolović, Jacqueline Vermeulen, Lisa A Gilhuijs-Pederson, Rachel IM van Haaften, Yuri Nikolsky, Chris TA Evelo, Antoine HC van Kampen, Theodorus BM Hakvo

Journal:

Year:

2007

Language:

english

File:

PDF, 3.74 MB

english, 2007

34

α-Tocopherol Inhibits Human Glutathione S-Transferase π

Rachel I.M. van Haaften, Chris T.A. Evelo, Guido R.M.M. Haenen, Aalt Bast

Journal:

Biochemical and Biophysical Research Communications

Year:

2001

Language:

english

File:

PDF, 56 KB

english, 2001

35

Hydroxylamine Treatment Increases Glutathione-Protein and Protein-Protein Binding in Human Erythrocytes

Anita A.M.G. Spooren, Chris T.A. Evelo

Journal:

Blood Cells, Molecules, and Diseases

Year:

1997

Language:

english

File:

PDF, 690 KB

english, 1997

36

Two Mechanisms for Toxic Effects of Hydroxylamines in Human Erythrocytes: Involvement of Free Radicals and Risk of Potentiation

Chris T.A. Evelo, Anita A.M.G Spooren, Rob A.G. Bisschops, Leo G.M. Baars, John M. Neis

Journal:

Blood Cells, Molecules, and Diseases

Year:

1998

Language:

english

File:

PDF, 173 KB

english, 1998

37

A Study on the Interaction between Hydroxylamine Analogues and Oxyhemoglobin in Intact Erythrocytes

Anita A.M.G Spooren, Chris T.A Evelo

Journal:

Blood Cells, Molecules, and Diseases

Year:

2000

Language:

english

File:

PDF, 109 KB

english, 2000

38

Identification of novel ER-α target genes in breast cancer cells: Gene- and cell-selective co-regulator recruitment at target promoters determines the response to 17β-estradiol and tamoxifen

Andrea Romano, Michiel Adriaens, Sabine Kuenen, Bert Delvoux, Gerard Dunselman, Chris Evelo, Patrick Groothuis

Journal:

Molecular and Cellular Endocrinology

Year:

2010

Language:

english

File:

PDF, 1.43 MB

english, 2010

39

A systematic review of large scale and heterogeneous gene array data in heart failure

Umesh C. Sharma, Saraswati Pokharel, Chris T.A. Evelo, Jos G. Maessen

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2005

Language:

english

File:

PDF, 200 KB

english, 2005

40

Inhibition of various glutathione S-transferase isoenzymes by RRR-α-tocopherol

Rachel I.M. van Haaften, Guido R.M.M. Haenen, Peter J. van Bladeren, Jan J.P. Bogaards, Chris T.A. Evelo, Aalt Bast

Journal:

Toxicology in Vitro

Year:

2003

Language:

english

File:

PDF, 177 KB

english, 2003

41

Pathway Enrichment Based on Text Mining and Its Validation on Carotenoid and Vitamin A Metabolism

Waagmeester, Andra, Pezik, Piotr, Coort, Susan, Tourniaire, Franck, Evelo, Chris, Rebholz-Schuhmann, Dietrich

Journal:

Omics A Journal of Integrative Biology

Year:

2009

Language:

english

File:

PDF, 477 KB

english, 2009

42

Impact of supervised gene signatures of early hypoxia on patient survival

Renaud Seigneuric, Maud H.W. Starmans, Glenn Fung, Balaji Krishnapuram, Dimitry S.A. Nuyten, Arie van Erk, Michael G. Magagnin, Kasper M. Rouschop, Sriram Krishnan, R. Bharat Rao, Chris T.A. Evelo, Ad

Journal:

Radiotherapy and Oncology

Year:

2007

Language:

english

File:

PDF, 611 KB

english, 2007

43

Open PHACTS: semantic interoperability for drug discovery

Antony J. Williams, Lee Harland, Paul Groth, Stephen Pettifer, Christine Chichester, Egon L. Willighagen, Chris T. Evelo, Niklas Blomberg, Gerhard Ecker, Carole Goble, Barend Mons

Journal:

Drug Discovery Today

Year:

2012

Language:

english

File:

PDF, 596 KB

english, 2012

44

Marginal selenium deficiency down-regulates inflammation-related genes in splenic leukocytes of the mouse

Anna P. Kipp, Antje Banning, Evert M. van Schothorst, Catherine Méplan, Susan L. Coort, Chris T. Evelo, Jaap Keijer, John Hesketh, Regina Brigelius-Flohé

Journal:

The Journal of Nutritional Biochemistry

Year:

2012

Language:

english

File:

PDF, 379 KB

english, 2012

45

An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies

Michiel E Adriaens, Magali Jaillard, Lars MT Eijssen, Claus-Dieter Mayer, Chris TA Evelo

Journal:

Year:

2012

Language:

english

File:

PDF, 1.20 MB

english, 2012

46

A pathway approach to investigate the function and regulation of SREBPs

Sabine Daemen, Martina Kutmon, Chris T. Evelo

Journal:

Genes & Nutrition

Year:

2013

Language:

english

File:

PDF, 394 KB

english, 2013

47

Consensus statement understanding health and malnutrition through a systems approach: the ENOUGH program for early life

Kaput, Jim, Ommen, Ben, Kremer, Bas, Priami, Corrado, Monteiro, Jacqueline Pontes, Morine, Melissa, Pepping, Fre, Diaz, Zoey, Fenech, Michael, He, Yiwu, Albers, Ruud, Drevon, Christian A., Evelo, Chri

Journal:

Genes & Nutrition

Year:

2014

Language:

english

File:

PDF, 437 KB

english, 2014

48

Physiologically Based Toxicokinetic Modeling of 1,3-Butadiene Lung Metabolism in Mice Becomes More Important at Low Doses

Chris T. A. Evelo, Johanna G. M. Oostendorp, Wil F. ten Berge and Paul J. A. Borm

Journal:

Environmental Health Perspectives

Year:

1993

Language:

english

File:

PDF, 3.69 MB

english, 1993

49

A network biology workflow to study transcriptomics data of the diabetic liver

Kutmon, Martina, Evelo, Chris T, Coort, Susan L

Journal:

Year:

2014

Language:

english

File:

PDF, 2.16 MB

english, 2014

50

Role of the Rhoa/Rho Kinase System in Flow-Related Remodeling of Rat Mesenteric Small Arteries in Vivo

Wesselman, Jos P.M., Kuijs, Robin, Hermans, J.J. Rob, Janssen, Ger M.J., Fazzi, Gregorio E., van Essen, Helma, Evelo, Chris T.A., Struijker-Boudier, Harry A.J., De Mey, Jo G.R.

Journal:

Journal of Vascular Research

Year:

2004

Language:

english

File:

PDF, 348 KB

english, 2004

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